Sorry! I should have replied to this topic sooner. I hope this explanation clarifies the workflow. This note might also be helpful for checking the input/output files:
https://github.com/ladybug-tools/honeybee/wiki/Daylighting-simulation-folder-structure
I’m looking forward to know more about the outcome of the Quality Control.
Finally consider updating to the new release: Honeybee[+] 0.0.04 for Grasshopper, Ladybug 0.2.0 and Honeybee 0.1.7 for Dynamo Release